Published January 2026 | Version Supplemental material
Journal Article Open

Clumped isotopes tracing methane cycle and budget: a review

  • 1. ROR icon Tianjin University
  • 2. ROR icon University of California, Los Angeles
  • 3. ROR icon University of California, Santa Barbara
  • 4. ROR icon California Institute of Technology
  • 5. ROR icon Swiss Federal Laboratories for Materials Science and Technology
  • 6. ROR icon University of California, Berkeley
  • 7. ROR icon University of Arizona

Abstract

Methane (CH4) is both a major energy resource and a key greenhouse gas in the Earth's carbon cycle. The clumped isotope geochemistry of methane (Δ13CH3D and Δ12CH2D2) offers a unique and effective tool for understanding methane sources and sinks. In this work, we comprehensively compiled a global methane clumped isotopes dataset (n = 1061). Combined with our own measured data (n = 26) and machine learning predictions, we discuss the efficacy of clumped isotope analyses of CH4 to infer methane origin mechanisms and to constrain post-generation processes. Insights gleaned through field observations, laboratory-controlled experiments and geochemical modelling allow an isotopologue-scale reconstruction of the biogeochemical methane cycle and its evolution through transformation (or gas migration) fractionation. The most up-to-date evidence suggests that equilibrated and disequilibrium clumped isotope compositions record reservoir geothermal events and subsequent microbial alteration, as well as kinetically-driven methane metabolism, in the low-temperature surface Earth environment. Modern estimates of the atmospheric methane budget, incorporating source and sink contributions through both forward and reverse constraints, are essential for leveraging clumped isotopes to gain a deeper understanding of Earth system dynamics. Future research that expands the observation of methane clumped isotope data on a broader scale and integrates these findings into methane cycle modelling could provide crucial insights into the potential impacts of anthropogenic influences on the global carbon cycle and climate change.

Copyright and License

© 2025 Elsevier B.V. All rights are reserved, including those for text and data mining, AI training, and similar technologies.

Acknowledgement

This work was supported by National Natural Science Foundation of China (Grant no. 42293262, 42494824, 42503042, 42250710153), the Tianjin Municipal Science and Technology Bureau (Grant no. 24JRRCRC00020) and the Haihe Laboratory of Sustainable Chemical Transformations. Xinchu Wang was supported by the Postdoctoral Fellowship Program of CPSF (Grant no. GZC20241195; 2024 M762342), the China Postdoctoral Science Foundation - Tianjin Joint Support Program (Grant no. 2024T019TJ). Naizhong Zhang was supported by the JSPS KAKENHI Grant (Grant no. 22K14134). Jennifer McIntosh was supported by the NSF EAR FRES SMRFS project (Grant no. 2120733). We thank all researchers working on methane clumped isotopes for publishing their high quality data.

Supplemental Material

Supplementary data related to CH4 emissions, source-sink calculation and machine learning models (XLSX);

Supplementary material on description of methane biogeochemical processes, model construction, and computational details, along with necessary experimental and data compilation figures (DOCX)

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Additional details

Funding

National Natural Science Foundation of China
42293262
National Natural Science Foundation of China
42494824
National Natural Science Foundation of China
42503042
National Natural Science Foundation of China
42250710153
Tianjin Municipal Science and Technology Commission
24JRRCRC00020
China Postdoctoral Science Foundation
GZC20241195
China Postdoctoral Science Foundation
2024M762342
China Postdoctoral Science Foundation
2024T019TJ
Japan Society for the Promotion of Science
22K14134
National Science Foundation
EAR-2120733

Dates

Submitted
2025-04-03
Accepted
2025-11-24
Available
2025-11-27
Available online
Available
2025-12-01
Version of record

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