Published February 24, 2026 | Version In Press
Journal Article Open

Microbially mediated carbon utilization by a cold-water coral inhabiting methane seeps

  • 1. ROR icon Temple University
  • 2. ROR icon Occidental College
  • 3. ROR icon University of California, Santa Cruz
  • 4. ROR icon Rutgers, The State University of New Jersey
  • 5. ROR icon California Institute of Technology
  • 6. ROR icon University of Alaska Anchorage

Abstract

Deep-sea methane seeps fuel biodiverse habitats sustained by the release of hydrocarbon-rich fluids and associated microbial activity. Here, we describe the ecology of a seep-associated cold-water coral and provide evidence of its associations with chemosynthetic bacteria. High-resolution seafloor surveys revealed that the distribution of this coral was predominantly confined to actively seeping zones, and habitat suitability models confirmed that proximity to active seepage was an important factor influencing the coral’s distribution. Stable carbon-isotope values were consistent with a nutritional strategy incorporating chemosynthetically derived carbon, likely as a supplement to suspension feeding on photosynthetically derived material. Microbial metabarcoding confirmed the presence of both thiotrophic and methanotrophic bacteria, including SUP05 and MMG-2 groups. Incubations with 13C-labelled methane further revealed this species may also be capable of assimilating methane-derived carbon into its biomass. These findings provide new evidence of a previously underrecognized facultative symbiosis between cold-water corals and chemosymbiotic bacteria and suggest that these corals are not restricted to the periphery of seep habitats. Instead, they may exploit microbial associations, including contributions from both thiotrophic and potentially methanotrophic taxa, to persist in actively seeping areas.

Copyright and License

© The Author(s) 2026. Open Access. This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.

Acknowledgement

We would like to thank the Costa Rica Ministerio de Ambiente y Energía (Sistema Nacional de Áreas de Conservación/Comisión Nacional para la Gestión de la Biodiversidad) for granting collection permits (AT37-13: SINAC-CUS-PI-R-035-2017, AT42-03: SINAC-SE-064-2018) as well as the National Science foundation and Sigma Xi for funding this research. We also thank captains and crew of the R/V Atlantis, HOV Alvin pilots and technicians and the AUV Sentry team, and the science party from cruises AT37-13 and AT42-03 for their assistance at sea, particularly J. Cortés, C. Gomez, and O. Breedy. Similarly, we would like to thank the captain and crew of the R/V Falkor, ROV SuBastian pilots and technicians and the science party of cruise FK190106.

Funding

Support for this research was primarily provided by NSF (grant OCE 1635219). Support was also provided to A.S in part by Sigma Xi (G20201001105913332).

Data Availability

16S rRNA barcode sequences and metadata collected in this study are available from the NCBI Small Read Archive (BioProject # PRJNA1085978). All other data are available in the main text or the supplementary materials.

Supplemental Material

Supplementary Information

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Journal Article: https://rdcu.be/e6Dwp (ReadCube)

Funding

National Science Foundation
OCE-1635219
Sigma Xi
G20201001105913332

Dates

Submitted
2024-09-11
Accepted
2025-12-08
Available
2026-02-24
Published

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