Published December 2012
| Version Published + Accepted Version
Journal Article
Open
Data management challenges in three-dimensional EM
Creators
- Patwardhan, Ardan1
- Carazo, José-Maria2
- Carragher, Bridget3
- Henderson, Richard4
- Heymann, J. Bernard5
- Hill, Emma6
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Jensen, Grant J.7
- Lagerstedt, Ingvar1
- Lawson, Catherine L.8
- Ludtke, Steven J.9
- Mastronarde, David10
- Moore, William J.6
- Roseman, Alan11
- Rosenthal, Peter12
- Sorzano, Carlos-Oscar S.2
- Sanz-García, Eduardo1
- Scheres, Sjors H. W.4
- Subramaniam, Sriram13
- Westbrook, John8
- Winn, Martyn14
- Swedlow, Jason R.6
- Kleywegt, Gerard J.1
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1.
European Bioinformatics Institute
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2.
National Center for Biotechnology
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3.
Scripps Research Institute
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4.
MRC Laboratory of Molecular Biology
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5.
National Institute of Arthritis and Musculoskeletal and Skin Diseases
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6.
University of Dundee
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7.
California Institute of Technology
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8.
Rutgers, The State University of New Jersey
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9.
Baylor College of Medicine
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10.
University of Colorado Boulder
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11.
University of Manchester
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12.
The Francis Crick Institute
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13.
Center for Cancer Research
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14.
Daresbury Laboratory
Abstract
This report describes the outcomes of the Data Management Challenges in 3D Electron Microscopy workshop. Key topics discussed include data models, validation and raw-data archiving. The meeting participants agreed that the EMDataBank should take the lead in addressing these issues, and concrete action points were agreed upon that will have a substantial impact on the accessibility of three-dimensional EM data in biology and medicine.
Additional Information
© 2012 Nature Publishing Group, a division of Macmillan Publishers Limited. This work is licensed under a Creative Commons Attribution-NonCommercial-Share Alike 3.0 Unported License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-sa/3.0/. Received 8 May; accepted 24 September; published online 5 December 2012. We thank P. Haslam for help with the manuscript. This workshop and the OMERO-EMDB project are supported by the BBSRC (BB/G022577). The EMDataBank is funded by the US National Institutes of Health National Institute of General Medical Sciences (R01GM079429). The work on the EMDB at the PDBe also profits from funding by European Molecular Biology Laboratory–EBI and the Wellcome Trust (088944).Attached Files
Published - nsmb.2426.pdf
Accepted Version - nihms585068.pdf
Files
nihms585068.pdf
Additional details
Identifiers
- PMCID
- PMC4048199
- Eprint ID
- 36358
- Resolver ID
- CaltechAUTHORS:20130114-141533149
Funding
- Biotechnology and Biological Sciences Research Council (BBSRC)
- BB/G022577
- NIH
- R01GM079429
- European Molecular Biology Laboratory (EMBL)
- Wellcome Trust
- 088944
Dates
- Created
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2013-01-15Created from EPrint's datestamp field
- Updated
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2021-11-09Created from EPrint's last_modified field